Hi, I'm James Roney.

I'm a computational biology PhD student at MIT, where I am lucky to be supported by the Hertz Fellowship. From 2022-2024 I was a research engineer at DE Shaw Research in New York, and before that I completed my undergraduate studies at Harvard. I'm broadly interested in applying computational methods to problems involving biological structure. My specific areas of interest include the use of machine learning to help with protein structure modeling, protein design, structure-based drug design, and molecular simulation.



Publications

State-of-the-art estimation of protein model accuracy using AlphaFold
James Roney and Sergey Ovchinnikov
Physical Review Letters, 2022
Identifying valuable pointers in heap data
James Roney, Troy Appell, Prateek Pinisetti, and James Mickens
Workshop on Offensive Technologies, 2021
ESTIpop: A computational tool to simulate and estimate parameters for continuous-time Markov branching processes
James Roney, Jeremy Ferlic, Thomas McDonald, and Franziska Michor
Bioinformatics, 2020